Data Manager - Molecular Pharma Service Lab

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The Position

Data Manager – Molecular Pharma Service Lab - Pleasanton, CA

A healthier future. It’s what drives us to innovate. To continuously advance science and ensure everyone has access to the healthcare they need today and for generations to come. Creating a world where we all have more time with the people we love. 

The Opportunity:

We are seeking a highly detail-oriented and regulatory-savvy Data Manager to oversee data integrity, flow, and compliance in our CAP/CLIA and RED laboratories. This role will be central to ensuring the accuracy, traceability, and security of clinical data from sample receipt through result reporting.
The ideal candidate will have experience in laboratory data systems, a strong understanding of Sequencing and PCR workflows and data, and a deep commitment to quality and compliance.

Key Roles & Responsibilities:

Data Governance & Workflow Oversight

• Ensure end-to-end traceability, security and integrity of data across the sequencing workflow.

• Manage sample metadata and ensure alignment across LIMS, sequencing instruments, bioinformatics pipelines, and clinical reporting systems.

• Identify and resolve data discrepancies, gaps, or integrity risks.

Regulatory Compliance (CAP/CLIA)

• Maintain audit-ready data practices, logs, and reports in compliance with CLIA, CAP and institutional standards.

• Participate in internal audits and assist during CAP inspections and proficiency testing.

• Maintain documentation for data handling SOPs, data transfer logs, and change tracking.

System Integration & LIMS Support

• Oversee data flow and integration between lab instruments, LIMS, bioinformatics tools, and external systems (e.g., EMRs).

• Collaborate with IT, LIMS and bioinformatics teams to maintain or improve system interoperability and automation.

• Collaborate with IT, LIMS and bioinformatics teams to set up and test data delivery methods for clinical studies.

QC and Reporting Support

• Review and manage sequencing run metrics and quality control flags with Lab Director

• Support automated and manual generation of clinical reports; ensure accurate transfer of interpreted results.

• Flag and escalate any failures (Lab Director/CLIA/IT, Bfx, LIMs) or inconsistencies in data output.

Data Storage, Security, and Archiving

• Manage secure storage of clinical, raw and processed data; ensure data retention policies are met.

• Coordinate data archiving processes and secure deletion per SOPs and compliance requirements.

Cross-Functional Collaboration

• Act as a key interface between lab, bioinformatics, LIMS, clinical reporting, and operations teams.

• Provide training or guidance on data best practices, systems, and SOPs.

Qualifications:

• Bachelor’s degree in bioinformatics, molecular biology, computer science, data science, or related field

• 2–5 years of experience in a regulated laboratory setting (preferably CLIA/CAP-accredited)

• Familiarity with NGS and PCR workflows, file types (FASTQ, BAM, VCF, CSV), and LIMS platforms

• Strong organizational skills and attention to detail

​Preferred Qualifications:

• Experience working with SQL, Python, or other data scripting tools

• Familiarity with FHIR, HL7, or clinical data integration standards

• Experience in system integration or data automation

• Prior involvement in CAP inspections or CLIA audits

The expected salary range for this position based on the primary location of Pleasanton, CA is $101,400 - 188,200.  Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors p