Jobs and Careers
AL

Senior Orchestration Software Engineer- Workflow & Integration

Alexion Pharmaceuticals, Inc.
New Haven, United Statesfull_timeVerifiedPosted 22 Jun 2026

About the role

 

This is what you will do: 

Be a key member of the Advanced Robotics & Data Orchestration Team within Alexion’s Product Development & Clinical Supply organization.   You will own the software layer that coordinates instruments and robots into push-button, reusable workflows. You will design state models, events, and integration modules; partner with data engineering experts to define schemas and event contracts; and deliver production-grade releases with observability and rollback. This role is software-leaning and science-facing: experience with pharmaceutical product development workflows, verification via vision/sensors, and data product thinking will help you translate scientist needs into robust orchestration.  Help us accelerate life-changing therapies to patients with rare and ultra-rare diseases. 

  • Translate scientist and operator requirements (throughput, usability, exception paths, reliability targets) into orchestration designs and software implementations. 

  • Implement run-control logic (state models/events), exception handling, recovery/rollback, and scheduling for automated work cells and instruments. 

  • Develop reusable drivers/adapters and interface modules aligned to documented contracts, coding standards, and versioning, review code, and tests for quality. 

  • Integrate instruments/robots with schedulers and data services using interfaces and SDKs; partner with data engineering experts to define schemas and event models to support analytics and ML features. 

  • Apply configuration-as-code, CI/CD, automated testing, and secure development practices; ship documented releases and migration guides. 

  • Instrument workflows with telemetry/logs/alerts; define service level indicators and objectives for orchestration software; participate in postmortems and reliability exercises. 

  • Produce onboarding artifacts (connectivity patterns, validation checklists, example configurations) and support operator UAT and day-2 enablement. 

  • Support commissioning, cutovers, and hypercare for priority workflows; track reuse, commissioning time, error/rerun reduction, and uptime. 

 

You will be responsible for: 

  • Orchestration software components that meet reliability and usability targets across instruments and work cells. 

  • Audit-ready data trails for setpoints, states, recipe steps, and analytical outputs; alignment to validation and security expectations. 

  • High-quality documentation, release notes, and onboarding kits that enable repeatable adoption. 

  • Continuous improvement of orchestration software reliability using telemetry and corrective actions. 

You will need to have: 

  • Education/experience: PhD + 0 years, or MS + 4 years, or BS + 8 years in Computer Science, Engineering, or a related field (or equivalent experience)—including 4+ years building software for lab or industrial automation or robotics, with hands on orchestration or controls integration. 

  • Proficiency in one or more languages common in automation (for example, Python, C#, or Java) and experience with event-driven patterns and state machines. 

  • Experience with interfaces, SDKs, and message buses; integrating with schedulers and data services; familiarity with schema design, data contracts, and basic SQL. 

  • Collaboration with scientists/operators, mechatronics/controls, and data engineers; clear, user-focused documentation. 

  • The duties of this role may require periodic work in a laboratory or manufacturing environment. As is typical of such roles, employees must be able, with or without an accommodation to: lift/carry 15/30 pounds unassisted/assisted; work comfortably in a controlled environment with and around hazardous materials; gown/degown PPE; use a computer; engage in communications via phone, video, and electronic messaging; engage in problem solving and non-linear thought, analysis, and dialogue; collaborate with others; maintain general availability during standard business hours.  

We would prefer for you to have: 

  • Experience with biologics workflows (cell culture, purification, analytics) and integrating with ELN/LIMS/SDMS systems. 

  • Hands-on work with robotics SDKs, verification via vision/sensors, barcode or RFID, or material-handling subsystems. 

  • Familiarity with observability tooling (metrics/logs/alerts), defining service levels, and structured postmortems. 

In person working statement: 

When we put unexpected teams in the same room, we unleash bold thinking with the pow

Apply for this role

Generate a tailored application kit with a matched cover letter, interview prep, and CV highlights — in under 60 seconds.

Apply Now →Generate Application Kit

Free account required — sign up in 30s

Company

Alexion Pharmaceuticals, Inc.

View company profile →